PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_C59B6322F.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 432aa    MW: 47466.4 Da    PI: 4.972
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_C59B6322F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.41.2e-291859101
                            HHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
           HSF_DNA-bind   9 iledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                            +++d++++ ++sws ++ +sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+         weF +++F kg+k+ll+
  Traes_6DS_C59B6322F.1   1 MVDDPATDAVVSWSdASDTSFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFVKGQKHLLK 79 
                            899***********76679****************************************999.........***************** PP

                            XXXXXX CS
           HSF_DNA-bind  96 kikrkk 101
                            +i r+k
  Traes_6DS_C59B6322F.1  80 NIYRRK 85 
                            ****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-30184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-45184IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-26184IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-28184IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-93345IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403458IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-94658IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MVDDPATDAV VSWSDASDTS FVVWNSPEFA ARLLPAYFKH SNFSSFIRQL NTYGFRKIDP  60
ERWEFGNEYF VKGQKHLLKN IYRRKPIHSH SHQPGALPDN ERSFFEDEID RLAREKANLQ  120
AELWKSKQQE SGTMFQIEAL ERRAVDMEQR QGKMIAFLQQ ASKNPHFVGK LVKMAEASSM  180
FADALHKKRR LSGLDYAVEA TETASFCDDH SATSRQEMGN LLNQHFSDKL KLGLCSAATE  240
SNLVTLSTQS SHEDNCSPHG RHPPGHDGMG TGGLPLVPQM MELSDTGTSI CPSKSSFFTP  300
AVNDEGLSPC HLSLTLASCS MDVDRGQASN ADGGTTVDEG SDNPPEATAT AFGGNQRASV  360
DAGTAEALTA REDTRVAAEP AAPVKANDNF WEQFLTERPG DASSGPRDPS MDKGQTEGGE  420
KDDREDTEQL KL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-1918436129Heat shock factor protein 1
5d5v_B3e-1918436129Heat shock factor protein 1
5d5v_D3e-1918436129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3555640.0AK355564.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022K17.
GenBankAK3575040.0AK357504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574986.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLW5H4Q50.0W5H4Q5_WHEAT; Uncharacterized protein
STRINGMLOC_50620.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-102HSF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]